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  1. Motivated by a wide range of applications, research on agent-based models of contagion propagation over networks has attracted a lot of attention in the literature. Many of the available software systems for simulating such agent-based models require users to download software, build the executable and set up execution environments. Further, running the resulting executable may require access to high performance computing clusters. Our work describes an open access software system (NetSimS) that works under the “Modeling and Simulation as a Service” (MSaaS) paradigm. It allows users to run simulations by selecting agent-based models and parameters, initial conditions, and networks through a web interface. The system supports a variety of models and networks with millions of nodes and edges. In addition to the simulator, the system includes components that allow users to choose initial conditions for simulations in a variety of ways, to analyze the data generated through simulations, and to produce plots from the data. We describe the components of NetSimS and carry out a performance evaluation of the system. We also discuss two case studies carried out on large networks using the system. NetSimS is a major component within net.science, a cyberinfrastructure for network science. Index Terms—Agent-Based Simulation, Contagion, Networks, Modeling and Simulation as a Service, Cyberinfrastructure 
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  2. Harris, F. ; Wu, R. ; Redei, A. (Ed.)
    Networks are pervasive in society: infrastructures (e.g., telephone), commercial sectors (e.g., banking), and biological and genomic systems can be represented as networks. Con- sequently, there are software libraries that analyze networks. Containers (e.g., Docker, Singularity), which hold both runnable codes and their execution environments, are in- creasingly utilized by analysts to run codes in a platform-independent fashion. Portability is further enhanced by not only providing software library methods, but also the driver code (i.e., main() method) for each library method. In this way, a user only has to know the invocation for the main() method that is in the container. In this work, we describe an automated approach for generating a main() method for each software library method. A single intermediate representation (IR) format is used for all library methods, and one IR instance is populated for one library method by parsing its comments and method signature. An IR for the main() method is generated from that for the library method. A source code generator uses the main() method IR and a set of small, hand-generated source code templates|with variables in the templates that are automatically customized for a particular library method|to produce the source code main() method. We apply our approach to two widely used software libraries, SNAP and NetworkX, as examplars, which combined have over 400 library methods. 
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